“Path forward to implementation and adoption of the SeqCode” (February 11/12 2021)

 

 

“Path forward to implementation and adoption of the SeqCode” (February 11/12 2021)

Objective: To determine a path forward for implementation and adoption
Format: Pre-recorded talks and resources

 

Watch Workshop Recording 2a

<

Watch Workshop Recording 1b

 

Pre-recorded talks and background reading

Pre-recorded talks and presenters are listed below along with associated papers

Translating between nomenclature systems

A Return to Linnaeus’s Focus on Diagnosis, Not Description: The Use of DNA Characters in the Formal Naming of Species Susanne S. Renner
   Associated paper: 
   A Return to Linnaeus’s Focus on Diagnosis, Not Description: The Use of DNA Characters in the Formal Naming of Species Renner. Systematic Biology

Out of the Box Vincent Robert
Virus taxonomy in a data rich world Arvind Varsani
Eukaryotic plankton diversity in the sunlit ocean Chris Lane
Integration of international organizations, standards, and databases

Introduction to ICSP Iain Sutcliffe
WDCM Data Resources: GCM & gcType Juncai Ma, Linhuan Wu
The Leibniz Institute DSMZ Jörg Overmann
ISME Nicole Dubilier, Phil Hugenholtz
NCBI Conrad Schoch
Genome taxonomy database Donovan Parks
Genomics Standards Consortium
Scott Tighe GSC – Panelist-GSC-tighe.pdf  Emiley Eloe-Fadrosh, Scott Tighe

Microbial Genomes Atlas Kostas Konstantinidis
EzBioCloud Database Jongsik Chun

Supplementary Literature

Amann et al., 2014:
Bisgaard et al., 2019:
Cowan, 1970:
Dykhuizen, 1998:
Karthikeyan et al., 2019:
Konstantinidis and Rossello-Mora, 2015:
Konstantinidis et al., 2018:
Konstantinidis et al., 2020:
Konstantinidis et al., 2020:
Meziti et al., 2021:
Mora et al., 2011:
Murray and Schleifer, 1994:
Murray and Stackebrandt, 1995:
Oren and Garrity, 2017:
Oren et al., 2019:
Oren et al., 2020:
Overmann et al., 2019:
Padial et al. 2010:
Pallen et al., 2020:
Parker et al., 2019:
Rossello-Mora and Amann, 2001:
Rossello-Mora and Whitman, 2019:
Rossello-Mora, 2011:
Tindall et al., 2010:
Tindall et al., 2010:
Whitman 2015:
Whitman 2016:
Whitman et al., 1998:
Yarza et al., 2014:
Zoological Code:

A precursor workshop was conducted in 2018. Details about that event, along with recorded presentations, and background reading, can be found here